Chemistry drawing online

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Author / Affiliation / Email Article Menu Font Type: Arial Georgia Verdana Open AccessTechnical Note by Davide Alocci 1,2, Pavla Suchánková 3,4, Renaud Costa 5, Nicolas Hory 5, Julien Mariethoz 1,2, Radka Svobodová Vařeková 3,4, Philip Toukach 6 and Frédérique Lisacek 1,2,7,* 1 Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland 2 Computer Science Department, University of Geneva, 1211 Geneva, Switzerland 3 CEITEC–Central European Institute of Technology, Masaryk University Brno, 625 00 Brno-Bohunice, Czech Republic 4 National Centre for Biomolecular Research, Faculty of Science, 625 00 Brno-Bohunice, Czech Republic 5 Polytech Nice Sophia, Campus SophiaTech, 06903 Sophia-Antipolis, France 6 Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Laboratory of Carbohydrate Chemistry, 119991 Moscow, Russia 7 Section of Biology, University of Geneva, 1211 Geneva, Switzerland * Author to whom correspondence should be addressed. Submission received: 14 September 2018 / Revised: 23 November 2018 / Accepted: 29 November 2018 / Published: 5 December 2018 Abstract: SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The “quick mode” allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry.

The overall structure of pipelines and other supporting equipment. The purpose of the PFD is to build the image of the basic idea of ​​the chemical process. ConceptDraw PRO together with its Chemical and Process Engineering solution delivers the possibility to design Chemical Process Flow diagrams. It is designed for chemical industry engineers and designers. The vector stencils library "Periodic table of chemical elements" contains 119 icon symbols of chemical elements for drawing Mendeleev's periodic table, chemical diagrams, infographics and illustrations. "A chemical element is a pure chemical substance consisting of a single type of atom distinguished by its atomic number, which is the number of protons in its atomic nucleus. Elements are divided into metals, metalloids, and non-metals. Familiar examples of elements are carbon, nitrogen, oxygen (non-metals), silicon, arsenic (metalloids), aluminium, iron, copper, gold, mercury, and lead (metals). The lightest chemical elements, including hydrogen, helium and smaller amounts of lithium, beryllium and boron, are thought to have been produced by various cosmic processes during the Big Bang and cosmic-ray spallation. Production of heavier elements, from carbon to the very heaviest elements, proceeded by stellar nucleosynthesis, and these were made available for later solar system and planetary formation by planetary nebulae and supernovae, which blast these elements into space. The high abundance of oxygen, silicon, and iron on Earth reflects their common production in such stars. While most elements are generally stable, a small amount of natural transformation of one element to another also occurs in the decay of radioactive elements as well as other natural nuclear processes." [Chemical element. Wikipedia] The chemical symbols example "Design elements - Periodic table of chemical elements" was created using the ConceptDraw PRO software extended with the Chemistry solution from the Science and Education area of ConceptDraw Solution Park. Mendeleev periodic table icons The vector stencils library "Chemical elements" contains 118 icon symbols of chemical elements for drawing atoms, structural formulas and ball-and-stick models of inorganic and organic molecules and ions, and schemes of chemical reaction mechanisms. "In chemistry, the ball-and-stick model is a molecular model of a chemical substance which is to display both the three-dimensional position of the atoms and the bonds between them. The atoms are typically represented by spheres, connected by rods which represent the bonds. Double and triple bonds are usually represented by two or three curved rods, respectively. In a good model, the angles between the rods should be the same as the angles between the bonds, and the distances between the centers of the spheres should be proportional to the distances between the corresponding atomic nuclei. The chemical element of each atom is often indicated by the sphere's color." [Ball-and-stick model. Wikipedia] The chemical symbols example "Design elements - Chemical elements" was created using the ConceptDraw PRO software extended with the Chemistry solution from the Science and Education area of ConceptDraw Solution Park. Chemical element icons How to Draw Chemistry Structures | Chemistry | Design elements ... Chemistry Drawings | Chemistry Drawing Software | Chemistry ...Design elements

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HelpDesk Making chemistry drawings for science and education purposes involves many different elements that can be managed using ConceptDraw PRO. ConceptDraw Chemistry solution can be used as a tool for creating chemical schemes and diagrams of chemical lab set-ups and labware, formulas, reaction schemes, and molecular structures. With ConceptDraw PRO you can easily create and communicate chemistry drawings of any complexity. Chemistry This solution extends ConceptDraw PRO software with samples, template and libraries of vector stencils for drawing the Chemistry Illustrations for science and education. The vector stencils library "Chemical drawings" contains 81 symbols of organic compounds and functional groups for chemical drawing. Use it to draw structural formulas of organic molecules, schemes of chemical reactions and organic chemistry diagrams. "Structural drawings. Organic molecules are described more commonly by drawings or structural formulas, combinations of drawings and chemical symbols. The line-angle formula is simple and unambiguous. In this system, the endpoints and intersections of each line represent one carbon, and hydrogen atoms can either be notated explicitly or assumed to be present as implied by tetravalent carbon. The depiction of organic compounds with drawings is greatly simplified by the fact that carbon in almost all organic compounds has four bonds, nitrogen three, oxygen two, and hydrogen one. ... Organic reactions. Organic reactions are chemical reactions involving organic compounds. While pure hydrocarbons undergo certain limited classes of reactions, many more reactions which organic compounds undergo are largely determined by functional groups. The general theory of these reactions involves careful analysis of such properties as the electron affinity of key atoms, bond strengths and steric hindrance. These issues can determine the relative stability of short-lived reactive intermediates, which usually directly determine the path of the reaction. The basic reaction types are: addition reactions, elimination reactions, substitution reactions, pericyclic reactions, rearrangement reactions and redox reactions. ... Each reaction has a stepwise reaction mechanism that explains how it happens in sequence - although the detailed description of steps is not always clear from a list of reactants alone. The stepwise course of any given reaction mechanism can be represented using arrow pushing techniques in which curved arrows are used to track the movement of electrons as starting materials transition through intermediates to final products." [Organic chemistry. Wikipedia] The chemical symbols example "Design elements - Chemical drawings" was created using the ConceptDraw PRO software extended with the Chemistry solution from the Science and Education area of ConceptDraw Solution Park. Chemical symbols HelpDesk How to Draw a Chemical Process Flow Diagram Process Flow Diagram widely used in modeling of processes in the chemical industry. A Chemical Process Flow diagram (PFD) is a specialized type of flowchart. With the help of Chemical Process Flow Diagram engineers can easily specify the general scheme of the processes and chemical plant equipment. Chemical Process Flow Diagram displays the real scheme of the chemical process, the relationship between the equipment and the technical characteristics of the process. Chemical Process Flow Diagram illustrates the connections between the basic equipment as well as

Used in chemistry, glyco-chemistry and glycobiology gave rise to a series of editing tools. We however, limit our coverage to those that meet three requirements: (1) web-based, (2) freely accessible, and (3) exporting structures to standard encoding formats [2]. KegDraw can be considered as the earliest standalone online graphical glycan editor though it was preceded by a basic tool integrated in GlycoSuiteDB for graphical queries in the IUPAC condensed format used in that database [4]. KegDraw was designed to perform a similarity search in the KEGG databases where the original CarbBank [5] is integrated [6]. It was a Java application that needed to be installed and could produce low-resolution images where text labels of monosaccharides were connected by lines. GlycanBuilder [7] is a more recent java applet developed during the EuroCarb project [8]. This tool provides an interface to assemble glycan structures using the graphic visualization scheme proposed by the Consortium of Functional Glycomics (CFG) and described in [9]. GlycanBuilder was upgraded to work in a web environment, but it needs to be installed and connected with a server. Moreover, recent security upgrades of all major browsers seriously challenged the usage of Java applets. This web-based implementation usually involves fairly long time-lags during processing despite a recent upgrade [10]. However, this drawback can be avoided as demonstrated with the glycan structure builder of the GlycoViewer platform [11] a web interface for drawing glycans that pioneered in terms of design, usability and speed. A subjective weak point of this tool is